Commit ff4d6a89 by Francois Gygi

added copyright header


git-svn-id: http://qboxcode.org/svn/qb/trunk@638 cba15fb0-1239-40c8-b417-11db7ca47a34
parent b5800951
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// AndersonMixer.C // AndersonMixer.C
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: AndersonMixer.C,v 1.5 2007-10-19 16:24:03 fgygi Exp $ // $Id: AndersonMixer.C,v 1.6 2008-08-13 06:39:42 fgygi Exp $
#include "AndersonMixer.h" #include "AndersonMixer.h"
#include "blas.h" #include "blas.h"
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// AndersonMixer.h // AndersonMixer.h
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: AndersonMixer.h,v 1.5 2007-10-19 16:24:03 fgygi Exp $ // $Id: AndersonMixer.h,v 1.6 2008-08-13 06:39:42 fgygi Exp $
#ifndef ANDERSONMIXER_H #ifndef ANDERSONMIXER_H
#define ANDERSONMIXER_H #define ANDERSONMIXER_H
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// AngleCmd.h: // AngleCmd.h:
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: AngleCmd.h,v 1.3 2008-02-12 05:39:19 fgygi Exp $ // $Id: AngleCmd.h,v 1.4 2008-08-13 06:39:42 fgygi Exp $
#ifndef ANGLECMD_H #ifndef ANGLECMD_H
#define ANGLECMD_H #define ANGLECMD_H
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// AngleConstraint.C // AngleConstraint.C
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: AngleConstraint.C,v 1.4 2008-02-12 05:39:18 fgygi Exp $ // $Id: AngleConstraint.C,v 1.5 2008-08-13 06:39:42 fgygi Exp $
#include "AngleConstraint.h" #include "AngleConstraint.h"
#include "AtomSet.h" #include "AtomSet.h"
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// AngleConstraint.h // AngleConstraint.h
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: AngleConstraint.h,v 1.4 2007-10-19 16:24:03 fgygi Exp $ // $Id: AngleConstraint.h,v 1.5 2008-08-13 06:39:42 fgygi Exp $
#ifndef ANGLECONSTRAINT_H #ifndef ANGLECONSTRAINT_H
#define ANGLECONSTRAINT_H #define ANGLECONSTRAINT_H
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// Atom.C: // Atom.C:
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: Atom.C,v 1.3 2003-05-16 16:14:00 fgygi Exp $ // $Id: Atom.C,v 1.4 2008-08-13 06:39:42 fgygi Exp $
#include "Atom.h" #include "Atom.h"
#include <iomanip> #include <iomanip>
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// Atom.h: // Atom.h:
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: Atom.h,v 1.4 2007-10-19 16:24:03 fgygi Exp $ // $Id: Atom.h,v 1.5 2008-08-13 06:39:42 fgygi Exp $
#ifndef ATOM_H #ifndef ATOM_H
#define ATOM_H #define ATOM_H
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// AtomCmd.h: // AtomCmd.h:
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: AtomCmd.h,v 1.8 2007-10-19 16:24:03 fgygi Exp $ // $Id: AtomCmd.h,v 1.9 2008-08-13 06:39:42 fgygi Exp $
#ifndef ATOMCMD_H #ifndef ATOMCMD_H
#define ATOMCMD_H #define ATOMCMD_H
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// AtomSet.C // AtomSet.C
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: AtomSet.C,v 1.22 2008-03-21 00:25:46 fgygi Exp $ // $Id: AtomSet.C,v 1.23 2008-08-13 06:39:42 fgygi Exp $
#include "AtomSet.h" #include "AtomSet.h"
#include "Species.h" #include "Species.h"
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// AtomSet.h // AtomSet.h
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: AtomSet.h,v 1.20 2008-03-21 00:26:19 fgygi Exp $ // $Id: AtomSet.h,v 1.21 2008-08-13 06:39:42 fgygi Exp $
#ifndef ATOMSET_H #ifndef ATOMSET_H
#define ATOMSET_H #define ATOMSET_H
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// AtomSetHandler.C // AtomSetHandler.C
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: AtomSetHandler.C,v 1.11 2008-03-05 04:04:48 fgygi Exp $ // $Id: AtomSetHandler.C,v 1.12 2008-08-13 06:39:42 fgygi Exp $
#if USE_XERCES #if USE_XERCES
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// AtomSetHandler.h // AtomSetHandler.h
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: AtomSetHandler.h,v 1.3 2007-10-19 16:24:04 fgygi Exp $ // $Id: AtomSetHandler.h,v 1.4 2008-08-13 06:39:42 fgygi Exp $
#ifndef ATOMSETHANDLER_H #ifndef ATOMSETHANDLER_H
#define ATOMSETHANDLER_H #define ATOMSETHANDLER_H
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// AtomsDyn.h // AtomsDyn.h
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: AtomsDyn.h,v 1.4 2008-03-26 04:57:54 fgygi Exp $ // $Id: AtomsDyn.h,v 1.5 2008-08-13 06:39:42 fgygi Exp $
#ifndef ATOMSDYN_H #ifndef ATOMSDYN_H
#define ATOMSDYN_H #define ATOMSDYN_H
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// BLYPFunctional.C // BLYPFunctional.C
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: BLYPFunctional.C,v 1.4 2007-10-19 16:24:04 fgygi Exp $ // $Id: BLYPFunctional.C,v 1.5 2008-08-13 06:39:42 fgygi Exp $
#include <cmath> #include <cmath>
#include <cassert> #include <cassert>
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// BLYPFunctional.h // BLYPFunctional.h
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: BLYPFunctional.h,v 1.4 2007-10-19 16:24:04 fgygi Exp $ // $Id: BLYPFunctional.h,v 1.5 2008-08-13 06:39:42 fgygi Exp $
#ifndef BLYPFUNCTIONAL_H #ifndef BLYPFUNCTIONAL_H
#define BLYPFUNCTIONAL_H #define BLYPFUNCTIONAL_H
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// BOSampleStepper.C // BOSampleStepper.C
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: BOSampleStepper.C,v 1.42 2008-06-15 20:44:58 fgygi Exp $ // $Id: BOSampleStepper.C,v 1.43 2008-08-13 06:39:42 fgygi Exp $
#include "BOSampleStepper.h" #include "BOSampleStepper.h"
#include "EnergyFunctional.h" #include "EnergyFunctional.h"
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// BOSampleStepper.h // BOSampleStepper.h
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: BOSampleStepper.h,v 1.6 2007-10-19 16:24:04 fgygi Exp $ // $Id: BOSampleStepper.h,v 1.7 2008-08-13 06:39:42 fgygi Exp $
#ifndef BOSAMPLESTEPPER_H #ifndef BOSAMPLESTEPPER_H
#define BOSAMPLESTEPPER_H #define BOSAMPLESTEPPER_H
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// Base64Transcoder.C // Base64Transcoder.C
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: Base64Transcoder.C,v 1.5 2008-01-13 23:05:16 fgygi Exp $ // $Id: Base64Transcoder.C,v 1.6 2008-08-13 06:39:42 fgygi Exp $
#include "Base64Transcoder.h" #include "Base64Transcoder.h"
#include <iostream> #include <iostream>
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// Base64Transcoder.h // Base64Transcoder.h
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: Base64Transcoder.h,v 1.5 2007-10-19 16:24:04 fgygi Exp $ // $Id: Base64Transcoder.h,v 1.6 2008-08-13 06:39:42 fgygi Exp $
#ifndef BASE64TRANSCODER_H #ifndef BASE64TRANSCODER_H
#define BASE64TRANSCODER_H #define BASE64TRANSCODER_H
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// Basis.C // Basis.C
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: Basis.C,v 1.20 2008-06-15 20:46:05 fgygi Exp $ // $Id: Basis.C,v 1.21 2008-08-13 06:39:42 fgygi Exp $
#include "Basis.h" #include "Basis.h"
#include "Context.h" #include "Context.h"
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// Basis.h // Basis.h
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: Basis.h,v 1.9 2008-03-05 04:04:48 fgygi Exp $ // $Id: Basis.h,v 1.10 2008-08-13 06:39:42 fgygi Exp $
#ifndef BASIS_H #ifndef BASIS_H
#define BASIS_H #define BASIS_H
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// BasisMapping.C // BasisMapping.C
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: BasisMapping.C,v 1.2 2007-10-19 16:24:04 fgygi Exp $ // $Id: BasisMapping.C,v 1.3 2008-08-13 06:39:42 fgygi Exp $
#include "Basis.h" #include "Basis.h"
#include "Context.h" #include "Context.h"
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// //
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or <http://www.gnu.org/licenses/>.
//
////////////////////////////////////////////////////////////////////////////////
//
// BasisMapping.h // BasisMapping.h
// //
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
// $Id: BasisMapping.h,v 1.2 2007-10-19 16:24:04 fgygi Exp $ // $Id: BasisMapping.h,v 1.3 2008-08-13 06:39:42 fgygi Exp $
#ifndef BASISMAPPING_H #ifndef BASISMAPPING_H
#define BASISMAPPING_H #define BASISMAPPING_H
......
//////////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////////
//