////////////////////////////////////////////////////////////////////////////////
//
// Copyright (c) 2008 The Regents of the University of California
//
// This file is part of Qbox
//
// Qbox is distributed under the terms of the GNU General Public License
// as published by the Free Software Foundation, either version 2 of
// the License, or (at your option) any later version.
// See the file COPYING in the root directory of this distribution
// or .
//
////////////////////////////////////////////////////////////////////////////////
//
// DistanceCmd.h:
//
////////////////////////////////////////////////////////////////////////////////
#ifndef DISTANCECMD_H
#define DISTANCECMD_H
#include
#include "UserInterface.h"
#include "Sample.h"
#include
class DistanceCmd : public Cmd
{
public:
Sample *s;
DistanceCmd(Sample *sample) : s(sample) {};
const char *name(void) const { return "distance"; }
const char *help_msg(void) const
{
return
"\n distance\n\n"
" syntax: distance [-pbc] name1 name2\n\n"
" The distance command prints the distance between two atoms.\n"
" If the -pbc option is used, the smallest distance is\n"
" computed taking into account periodic boundary conditions.\n\n";
}
int action(int argc, char **argv)
{
if ( ! ( argc == 3 || argc == 4 ) )
{
if ( ui->onpe0() )
{
cout << " use: distance [-pbc] name1 name2" << endl;
}
return 1;
}
string name1, name2;
bool use_pbc = false;
if ( argc == 3 )
{
name1 = argv[1];
name2 = argv[2];
}
if ( argc == 4 )
{
if ( strcmp(argv[1],"-pbc") )
{
if ( ui->onpe0() )
{
cout << " use: distance [-pbc] name1 name2" << endl;
}
return 1;
}
use_pbc = true;
name1 = argv[2];
name2 = argv[3];
}
Atom* a1 = s->atoms.findAtom(name1);
Atom* a2 = s->atoms.findAtom(name2);
if ( a1 == 0 || a2 == 0 )
{
// either a1 or a2 was not found
if ( ui->onpe0() )
{
if ( a1 == 0 )
cout << " DistanceCmd: atom " << name1 << " not defined"
<< endl;
if ( a2 == 0 )
cout << " DistanceCmd: atom " << name2 << " not defined"
<< endl;
}
return 1;
}
if ( ui->onpe0() )
{
D3vector r12 = a1->position()-a2->position();
if ( use_pbc )
{
const UnitCell& cell = s->wf.cell();
cell.fold_in_ws(r12);
}
const double d = length(r12);
cout.setf(ios::fixed,ios::floatfield);
cout << " distance " << name1 << "-" << name2 << ": "
<< setprecision(3)
<< d << " (a.u.) / " << 0.529177*d << " (Ang)" << endl;
}
return 0;
}
};
#endif