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Use C I/O functions to write to output file and use fsync().


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k-points.


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Added set/get positions/velocities around iter_cmd to allow for use of 
move or set_velocity commands in iter_cmd scripts.
Use values of members iter_cmd_ and iter_cmd_period_ to determine if iter_cmd
must be executed. This allows BOSampleStepper objects created by other commands
to ignore iter_cmd by default.


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force is zero during the whole run.


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